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FelixKrueger / TrimGalore

A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
GNU General Public License v3.0
469 stars 151 forks source link

Allow max_n to equal zero #27

Closed dshivak closed 6 years ago

dshivak commented 6 years ago

For some downstream tools that don't tolerate any Ns in the sequence, can we exclude all N-containing sequences via --max_n 0? Currently this complains that max_n must be between 1 and 100.

FelixKrueger commented 6 years ago

I have tried to change this here: 5f73283e2a1e45ee95e34dfe66df6770c9cf867a. Hope it works!