Questions on null-model

[FelixMay]

• [ ] Put test data in data_raw folder please
• [ ] It seems the for loop is for 100 permutations irrespective of the function argument. Is this a mistake?
• [ ] I am not sure what the dataset input is. Just two or several simulations? I think it should be just two!
• [ ] Select two scenarios first and only than shuffle fragmentation labels!!! Otherwise, the design might become imbalanced
• [ ] Line 98 ist strange, because you do the same in every loop iteration. I think this is needed only once and to keep it clear the distance values should be in another variable than sSBR differences.

[aylit]

Test data for Simulation 8 is in the data_raw folder. Some of the discussed changes have now been made! Following the pseudo code, I separated the get_sSBR_dist() function from the get_null_modell() function (nullmodel.R) and filtering for timestep is now done outside of the function. The ribbonbase loop is still there, but will be worked on next!

[FelixMay]

Hi Aylin, sounds great! Let me know when you are done with your current plans and then I will review the code! You can also check the items in the list above so that we have an overview what was done.