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FenTechSolutions / CausalDiscoveryToolbox

Package for causal inference in graphs and in the pairwise settings. Tools for graph structure recovery and dependencies are included.
https://fentechsolutions.github.io/CausalDiscoveryToolbox/html/index.html
MIT License
1.08k stars 198 forks source link

pcalg and kpcalg not installed in docker image #125

Open lmz123321 opened 2 years ago

lmz123321 commented 2 years ago

Hi. I am using the cdt GPU docker image (nv-cdt and nv-cdt-dev) to run a PC algorithm.

After importing the cdt in python3, I use print(cdt.utils.R.RPackages), and it shows that pcalg and kpcalg are not installed (showing False values).

This causes the failure of createing a PC() object with an error output:

ImportError: R Package (k)pcalg/RCIT is not available. RCIT has to be installed from https://github.com/Diviyan-Kalainathan/RCIT

Plus: the cdt CPU docker image does NOT have this problem. Could you please update the GPU docker image ? Thx.

shahdhardn commented 2 years ago

Did you manage to solve this issue? If yes, please assist. Thanks.

lmz123321 commented 2 years ago

@shahdhardn Sorry, I didn't find a solution for this problem.

I used CPU version cdt docker instead.

I am waiting the authors of cdt to offer a solution.

diviyank commented 2 years ago

Hello,

Sorry for the delay, I'll update the image ASAP

Best, Diviyan

diviyank commented 1 year ago

We had some CICD issues that are being solved, sorry for the wait ! We should be good soon !