Determination of category 1 and category 2 transcripts

FenyoLab / L1EM

Estimate locus specific human LINE-1 expression.

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Determination of category 1 and category 2 transcripts #11

Open fw262 opened 1 year ago

fw262 commented 1 year ago

Hello,

I was wondering if you can provide some detail on how category 1 (has 5' UTR) and category 2 (no 5' UTR) transcripts are determined. Is this based on blastn results or is this information derived from the RepeatMasker L1HS and L1PA annotations?

Thanks for your help, Michael

VBRay commented 9 months ago

I have the same issue. Have you solved it? @fw262 Looking forward to the authors' reply. @wmckerrow @fenyo