Dear Fernando,
I'm sorry to bother you, I'm an outdoor for bioinformatics, so always have many problems of 3P-CLR that seem like a superb tool to fit my subject. I am trying to run 3P-CLR on our duck population genomics data, but I've just got data like vcf, map, fam and so on. I have no idea that you mentioned about Derived alleles and Sampled alleles in computing Drift rate of ABC populations. Usually, we were known that Derived alleles and Ancestral alleles, so I'm so confused about this question. Finally, I don't know how to deal with my data to fit 3P-CLR or just our data is not enough to use it. We can use our data to run CLR and XP-CLR, so I think that maybe it's my fault that don't know how to organize our data to fit 3P-CLR.
Dear Fernando, I'm sorry to bother you, I'm an outdoor for bioinformatics, so always have many problems of 3P-CLR that seem like a superb tool to fit my subject. I am trying to run 3P-CLR on our duck population genomics data, but I've just got data like vcf, map, fam and so on. I have no idea that you mentioned about Derived alleles and Sampled alleles in computing Drift rate of ABC populations. Usually, we were known that Derived alleles and Ancestral alleles, so I'm so confused about this question. Finally, I don't know how to deal with my data to fit 3P-CLR or just our data is not enough to use it. We can use our data to run CLR and XP-CLR, so I think that maybe it's my fault that don't know how to organize our data to fit 3P-CLR.
Thank you!
Best Wish, Rui