Ferlab-Ste-Justine / Post-processing-Pipeline

Variant analysis for genome and exome VGCFs
Apache License 2.0
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Refactor/cleanup modules#3 #11

Closed FelixAntoineLeSieur closed 2 weeks ago

FelixAntoineLeSieur commented 1 month ago

Now that nf-core modules are present, we no longer need to keep the placeholder modules fastqc and multiqc (at least 1 nf-core module is required for nf-core lint to work). I used the command nf-core modules remove fastqc and nf-core modules remove multiqc and removed some other miscellaneous files like the slack report and adaptive cards. I also reworded the contributing guidelines, so it does not mention forks and removed most content from the output.md for now. Tested locally.