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Ferlab-Ste-Justine / Post-processing-Pipeline

Variant analysis for genome and exome VGCFs
Apache License 2.0
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refactor/Samplefile channel + functions #2

Closed FelixAntoineLeSieur closed 4 months ago

FelixAntoineLeSieur commented 5 months ago

This branch is based on the first PR: InitialSchemas. Only review/merge after that PR is merged.

Adds the first function encountered in the main pipeline cqdg-denovo: sampleChannel, and the required local functions. This will create the initial input channel required for the rest of the pipeline.

I also added a few tests to verify the consistency of sampleFileFormat and sequencingType.