getPatternGeneSet: replace pathways column with gene.set

FertigLab / CoGAPS

Bayesian MCMC matrix factorization algorithm

https://www.bioconductor.org/packages/release/bioc/html/CoGAPS.html

BSD 3-Clause "New" or "Revised" License

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getPatternGeneSet: replace pathways column with gene.set #108

Closed jmitchell81 closed 6 months ago

jmitchell81 commented 6 months ago

Avoids redundant data frame column issue by renaming the "pathways" column to "gene.set" before converting this column to a factor ordered by adjusted p-value.