Seeking Clarification on Functions in the CoGAPS Package

FertigLab / CoGAPS

Bayesian MCMC matrix factorization algorithm

https://www.bioconductor.org/packages/release/bioc/html/CoGAPS.html

BSD 3-Clause "New" or "Revised" License

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Seeking Clarification on Functions in the CoGAPS Package #114

Closed mumdark closed 1 month ago

mumdark commented 1 month ago

Thank you for your excellent work. I noticed that this R package includes other functions such as scCoGAPS and GWCoGAPS, which are not mentioned in the vignette. What are the differences between these and CoGAPS?

Thanks for your help!

dimalvovs commented 1 month ago

Hey, thanks, those should probably be not exported anymore as having been deprecated. To learn more about running CoGAPS with single-cell or genome-wide mode, refer to the vignette section.

dimalvovs commented 1 month ago

closing as answered.