Open badoi opened 4 years ago
accidentally closed. Leaving open for when checkpoints is re-enabled on devel branch. Thanks for looking into this issue!
No problem. We are checking.
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On Apr 17, 2020, at 10:17 AM, BaDoi Phan notifications@github.com wrote:
accidentally closed. Leaving open for when checkpoints is re-enabled on devel branch. Thanks for looking into this issue!
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I am also having the same issue. Is this issue fixed in develop version?
Hi @FertigLab, thanks for such a great package!
I am also having this issue, I'm running CoGAPS v3.14.0
. How can I enable checkpoints?
Thanks!
Thanks! It was disabled in our R interface, but we are looking into adding it back in. Please stay tuned.
Elana J. Fertig, PhD Director of the Quantitative Sciences Division co-Director Convergence Institute co-Director Single-Cell Consortium Associate Cancer Center Director of Quantitative Sciences Daniel Nathans Scientific Innovator Associate Professor of Oncology, Biomedical Engineering, and Applied Mathematics and Statistics Johns Hopkins University https://fertiglab.com @FertigLab
On Mar 15, 2022, at 5:39 PM, Marc Elosua Bayés @.**@.>> wrote:
Hi @FertigLabhttps://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2FFertigLab&data=04%7C01%7Cejfertig%40jhmi.edu%7Ceedca855d5e44111249508da06cc4a76%7C9fa4f438b1e6473b803f86f8aedf0dec%7C0%7C0%7C637829771747522203%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=ALyMpnyENZlFfFHqR%2FHTzjL5e2tEvX0DGOIaajgaxfs%3D&reserved=0, thanks for such a great package! I am also having this issue, I'm running CoGAPS v3.14.0. How can I enable checkpoints? Thanks!
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I'm using scCoGAPS and haven't been able to use the checkpoint saving steps. I found that the
checkpointsEnabled()
is set toFALSE
, with no clear way to change this. I've used the BiocManager to install CoGAPS as well as the conda bioconductor to install CoGAPS on a slurm unix cluster. I've also installed on a mac, and all forms didn't have checkpointsEnabled(). Any thoughts to turn on checkpoints will be much appreciated.The compile settings (representative of one of these installations) is below.