I ran the vignette but I have some troubles on interpreting the results.
The rows in the example matrix have a prefix Hs. followed by a number. Is this a gene annotation?
If I understood correctly, would the patterns be groups of correlated features? If so, where can I find which feature belongs to which pattern? I was not able to find it in the result object.
Hs symbols correspond to the Unigene names, which still can be mapped to other names, for example Hs.93485
Features in patterns are not necessarily correlated, features x patterns matrix can be obtained by calling res@featureLoadings on the resulting CoGAPS object.
Hello
I ran the vignette but I have some troubles on interpreting the results.
The rows in the example matrix have a prefix Hs. followed by a number. Is this a gene annotation?
If I understood correctly, would the patterns be groups of correlated features? If so, where can I find which feature belongs to which pattern? I was not able to find it in the result object.