When trying to build the package from master branch of github repo, the build fails with the following error:
-- Sampling Phase --
10000 of 50000, Atoms: 72(A), 40(P), ChiSq: 108, Time: 00:00:12 / 00:00:21
20000 of 50000, Atoms: 77(A), 41(P), ChiSq: 115, Time: 00:00:14 / 00:00:20
30000 of 50000, Atoms: 78(A), 36(P), ChiSq: 135, Time: 00:00:17 / 00:00:21
40000 of 50000, Atoms: 73(A), 38(P), ChiSq: 111, Time: 00:00:19 / 00:00:21
50000 of 50000, Atoms: 75(A), 43(P), ChiSq: 118, Time: 00:00:21 / 00:00:21
Quitting from lines 243-248 [load single cell data from file] (CoGAPS.Rmd)
Error: processing vignette 'CoGAPS.Rmd' failed with diagnostics:
unknown input format
--- failed re-building 'CoGAPS.Rmd'
SUMMARY: processing the following file failed:
'CoGAPS.Rmd'
Error: Vignette re-building failed.
The bioconductor build passes these lines just fine, so it may mean that .Rds files are corrupted in github master branch (or created with an incompatible R version).
> sessionInfo()
R version 4.3.1 (2023-06-16)
Platform: x86_64-apple-darwin20 (64-bit)
Running under: macOS Monterey 12.6.6
Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/lib/libRlapack.dylib; LAPACK version 3.11.0
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
time zone: America/New_York
tzcode source: internal
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] CoGAPS_3.19.1
When trying to build the package from master branch of github repo, the build fails with the following error:
The bioconductor build passes these lines just fine, so it may mean that .Rds files are corrupted in github master branch (or created with an incompatible R version).