FinucaneLab / fine-mapping-inf

Fine-mapping with infinitesimal effects
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Example data #13

Closed cybluetree closed 3 months ago

cybluetree commented 3 months ago

Hi, congrats on this great work! Is it possible to provide example data ("Height.chr1.0-1000.z", "chr1.0-1000.ld.bgz") to run the code in the Wiki tutorial? Thank you!

python run_fine_mapping.py \ --sumstats Height.chr1.0-1000.z \ --beta-col-name beta \ --se-col-name se \ --ld-file chr1.0-1000.ld.bgz \ --n 100000 \ --save-npz \ --save-tsv \ --eigen-decomp-prefix chr1.0-1000 \ --output-prefix Height.chr1.0-1000