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FischerJo / FAME

GNU General Public License v3.0
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BAM/SAM output? #2

Open dpryan79 opened 5 years ago

dpryan79 commented 5 years ago

Thanks for the great tool. I asked about this at ISMB, but would it be possible to also output either SAM (ideally to a pipe) or BAM files either in place of or in addition to the methylation metrics? That would facilitate further QC and allow FAME to be used as a drop-in replacement in current pipelines.

FischerJo commented 5 years ago

We will soon support SAM/BAM output, as soon as I have some spare time to implement this. As time is scarce right now it could take an additional month until we can release it officially.

I will leave this ticket open until then. Thanks for your interest and please don't hesitate to post further feature requests.