--non_stranded parameter proposed but does not exist

FischerJo / FAME

GNU General Public License v3.0

14 stars 4 forks source link

--non_stranded parameter proposed but does not exist #7

Closed KerstenBreuer closed 5 years ago

KerstenBreuer commented 5 years ago

The tool proposed to use the "--non_stranded" parameter:

Warning! Many of the reads are mapped in different orientation          Stranding might harm the prediction performance.
            If you built a library where read 1 can occur as C->T or G->A converted, consider running the tool with
            "--non_stranded"
            flag.

But when trying it out, I get following error:

Don't know the option "--non_stranded". Terminating...

FischerJo commented 5 years ago

We renamed this parameter as "--unord_reads" due to potential misinterpretation of the flag. I will update the help text.