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FloWuenne / scFunctions

Functions for single cell data analysis
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gskb package end of life #12

Closed GildasLepennetier closed 3 years ago

GildasLepennetier commented 3 years ago

Trying to install with the fresh R version 4.1.0 (2021-05-18) returns an error concerning the gskb package dependency.

devtools::install_github("FloWuenne/scFunctions") ERROR: dependency ‘gskb’ is not available for package ‘scFunctions’

BiocManager::install("gskb") does not help since the package is apparently now deprecated see link

FloWuenne commented 3 years ago

Hi @GildasLepennetier ,

sorry to hear you had issues with the installation on a new R build.

I made a branch where I completely removed the gskb package and commented that the function using it is deprecated.

Maybe you can try:

devtools::install_github("FloWuenne/scFunctions", ref = "remove_gskb")

to see if this installs on your new machine?

Thanks for the issue!

GildasLepennetier commented 3 years ago

Hi Flo! It does install using this branch, indeed. Thanks for the reactivity! This was no big problem since I am sourcing the functions, just wanted you to have an up-to-date package ;) I will close the issue.