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FlukeAndFeather / jese4sci-FP

Final Project track of the jese4sci short course
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FP202 #29

Closed ShirleyJenniferSerranoRojas closed 2 years ago

ShirleyJenniferSerranoRojas commented 2 years ago

Workflow Function1 data rearrangement Input : num_for_smapc; d_name Rearrange the data so that intraspecific interactions are in the first row for each species Output: new_nums (rearranged data)

Function 2 Quantify interaction and extract pairs of interaction needed for plotting Input: new_nums; biw_data Output: int_timeseries (time series for every pair of species interaction)

Function 3 3D plot for the time series data Input: int_timeseries Output: Figure 2A from the paper: Ushio, M., Hsieh, Ch., Masuda, R. et al. Fluctuating interaction network and time-varying stability of a natural fish community. Nature 554, 360–363 (2018). https://doi.org/10.1038/nature25504

FlukeAndFeather commented 2 years ago

cc @yehchihfu @MaikeMorrison

Looks great! We've already talked about the details for these functions, so I think you're on the right track.