bchileen
commented
1 year ago Need to update install scripts to reflect the addition of 'terrainr' and 'maptiles' packages
Closed tadarby12 closed 1 year ago
bchileen
commented
1 year ago Need to update install scripts to reflect the addition of 'terrainr' and 'maptiles' packages
These are the Messages for Install R Packages:
Install R packages
Parameters
reinstall false
Messages
Start Time: Wednesday, March 22, 2023 7:53:18 AM Installing needed pacakges... Setting CRAN repository... Updating packages... Installing FluvialGeomorph packages... Installing RegionaCurve from GitHub... Skipping install of 'RegionalCurve' from a github remote, the SHA1 (bfcf5bfe) has not changed since last install. Use
force = TRUEto force installation Installing fluvgeo from GitHub... Downloading GitHub repo FluvialGeomorph/fluvgeo@v0.1.45 Skipping 1 packages not available: arcgisbinding Skipping 6 packages ahead of CRAN: ps, vctrs, pillar, tibble, gtable, XML [36m--[39m [36mR CMD build[39m [36m-----------------------------------------------------------------[39m[32mv[39m [38;5;247mchecking for file 'C:\Users\b5pmmtad\AppData\Local\Temp\1\ArcGISProTemp20244\Rtmpm25ClY\remotes4f14101030ca\FluvialGeomorph-fluvgeo-4364441/DESCRIPTION'[39m[36m[36m (780ms)[36m[39m
[38;5;247m-[39m[38;5;247m [39m[38;5;247mpreparing 'fluvgeo':[39m[36m[36m (7.6s)[36m[39m
checking DESCRIPTION meta-information ...
checking DESCRIPTION meta-information ...
[32mv[39m [38;5;247mchecking DESCRIPTION meta-information[39m[36m[39m
[38;5;247m-[39m[38;5;247m [39m[38;5;247mchecking for LF line-endings in source and make files and shell scripts[39m[36m[36m (845ms)[36m[39m
[38;5;247m-[39m[38;5;247m [39m[38;5;247mchecking for empty or unneeded directories[39m[36m[39m
[38;5;247m-[39m[38;5;247m [39m[38;5;247mbuilding 'fluvgeo_0.1.44.tar.gz'[39m[36m[39m
package 'fluvgeo' is in use and will not be installed Loading packages... Setting pandoc directory... Using pandoc: C:/Program Files/RStudio/bin/quarto Pandoc available: TRUE Setting Mapbox API key... Set ceramic cache to: C:\Users\b5pmmtad\AppData\Local/Cache/.ceramic Error: C stack usage 60564416 is too close to the limit Succeeded at Wednesday, March 22, 2023 7:54:32 AM (Elapsed Time: 1 minutes 14 seconds)
I also ran Update the Check for Package Updates Tool in R Studio.
Here is the Error for Aerial Overview for Report - L1:
Parameters
stream Site 1 42 County SWCD flowline_fc Z:\Work\FluvialGeomorph\Projects\Illinois_SSRP_Sites_2004_2016\SSRP_Sites\Site_1\Site_1_2017.gdb\FD\flowline xs_dimensions_fc Z:\Work\FluvialGeomorph\Projects\Illinois_SSRP_Sites_2004_2016\SSRP_Sites\Site_1\Site_1_2017.gdb\FD\xs_300_100_dims_L1 flowline_points_1 Z:\Work\FluvialGeomorph\Projects\Illinois_SSRP_Sites_2004_2016\SSRP_Sites\Site_1\Site_1_2017.gdb\FD\flowline_points flowline_points_2 Z:\Work\FluvialGeomorph\Projects\Illinois_SSRP_Sites_2004_2016\SSRP_Sites\Site_1\Site_1_2009.gdb\FD\flowline_points flowline_points_3
flowline_points_4
xs_points_1 Z:\Work\FluvialGeomorph\Projects\Illinois_SSRP_Sites_2004_2016\SSRP_Sites\Site_1\Site_1_2017.gdb\FD\xs_300_100_points xs_points_2 Z:\Work\FluvialGeomorph\Projects\Illinois_SSRP_Sites_2004_2016\SSRP_Sites\Site_1\Site_1_2009.gdb\FD\xs_300_100_points xs_points_3
xs_points_4
survey_name_1 2017 survey_name_2 2009 survey_name_3
survey_name_4
features_fc Z:\Work\FluvialGeomorph\Projects\Illinois_SSRP_Sites_2004_2016\SSRP_Sites\Site_1\Site_1_2017.gdb\FD\features dem Z:\Work\FluvialGeomorph\Projects\Illinois_SSRP_Sites_2004_2016\SSRP_Sites\Site_1\Site_1_2017.gdb\dem_hydro show_xs_map true profile_units feet aerial true elevation true xs_label_freq 10 exaggeration 10 extent_factor 1.2 output_dir Z:\Work\FluvialGeomorph\Projects\Illinois_SSRP_Sites_2004_2016\Reports output_format word_document
Messages
Start Time: Wednesday, March 22, 2023 7:45:33 AM Loading required package: purrr package 'purrr' was built under R version 4.2.2 Loading required package: sf package 'sf' was built under R version 4.2.3 Linking to GEOS 3.9.3, GDAL 3.5.2, PROJ 8.2.1; sf_use_s2() is TRUE Loading required package: sp package 'sp' was built under R version 4.2.2 Loading required package: raster package 'raster' was built under R version 4.2.3 Loading required package: rgdal package 'rgdal' was built under R version 4.2.2 Please note that rgdal will be retired during 2023, plan transition to sf/stars/terra functions using GDAL and PROJ at your earliest convenience. See https://r-spatial.org/r/2022/04/12/evolution.html and https://github.com/r-spatial/evolution rgdal: version: 1.6-5, (SVN revision 1199) Geospatial Data Abstraction Library extensions to R successfully loaded Loaded GDAL runtime: GDAL 3.5.2, released 2022/09/02 Path to GDAL shared files: C:/Users/b5pmmtad/AppData/Local/R/win-library/4.2/sf/gdal GDAL binary built with GEOS: TRUE Loaded PROJ runtime: Rel. 8.2.1, January 1st, 2022, [PJ_VERSION: 821] Path to PROJ shared files: C:/Users/b5pmmtad/AppData/Local/R/win-library/4.2/rgdal/proj PROJ CDN enabled: FALSE Linking to sp version:1.6-0 To mute warnings of possible GDAL/OSR exportToProj4() degradation, use options("rgdal_show_exportToProj4_warnings"="none") before loading sp or rgdal. Loading required package: tmap package 'tmap' was built under R version 4.2.1 Loading required package: ggplot2 package 'ggplot2' was built under R version 4.2.2 Loading required package: tibble Loading required package: ceramic package 'ceramic' was built under R version 4.2.1 Setting pandoc directory... Using pandoc: C:/Program Files/RStudio/bin/quarto Pandoc available: TRUE Compare input tool parameters [38;5;246m# A tibble: 26 x 3[39m param_name esri_type r_type[39m[23m [3m[38;5;246m[39m[23m [3m[38;5;246m[39m[23m
[3m[38;5;246m
[38;5;250m 1[39m stream character character [38;5;250m 2[39m flowline_fc character character [38;5;250m 3[39m xs_dimensions_fc character character [38;5;250m 4[39m flowline_points_1 character character [38;5;250m 5[39m flowline_points_2 character character [38;5;250m 6[39m flowline_points_3 NULL NULL
[38;5;250m 7[39m flowline_points_4 NULL NULL
[38;5;250m 8[39m xs_points_1 character character [38;5;250m 9[39m xs_points_2 character character [38;5;250m10[39m xs_points_3 NULL NULL
[38;5;250m11[39m xs_points_4 NULL NULL
[38;5;250m12[39m survey_name_1 character character [38;5;250m13[39m survey_name_2 character character [38;5;250m14[39m survey_name_3 NULL NULL
[38;5;250m15[39m survey_name_4 NULL NULL
[38;5;250m16[39m features_fc character character [38;5;250m17[39m dem character character [38;5;250m18[39m show_xs_map logical logical
[38;5;250m19[39m profile_units character character [38;5;250m20[39m aerial logical logical
[38;5;250m21[39m elevation logical logical
[38;5;250m22[39m xs_label_freq integer integer
[38;5;250m23[39m exaggeration double double
[38;5;250m24[39m extent_factor double double
[38;5;246m# i 2 more rows[39m [38;5;246m# i Use
print(n = ...)to see more rows[39m Reading layerflowline_points' from data sourceZ:\Work\FluvialGeomorph\Projects\Illinois_SSRP_Sites_2004_2016\SSRP_Sites\Site_1\Site_1_2017.gdb' using driverOpenFileGDB' Simple feature collection with 15824 features and 5 fields Geometry type: POINT Dimension: XYM Bounding box: xmin: 879189.6 ymin: 1973963 xmax: 883726.4 ymax: 1980721 m_range: mmin: 0 mmax: 4.7159 Projected CRS: NAD83(2011) / Illinois East (ftUS) Reading layerflowline_points' from data sourceZ:\Work\FluvialGeomorph\Projects\Illinois_SSRP_Sites_2004_2016\SSRP_Sites\Site_1\Site_1_2009.gdb' using driverOpenFileGDB' Simple feature collection with 21727 features and 5 fields Geometry type: POINT Dimension: XYM Bounding box: xmin: 879189.6 ymin: 1973964 xmax: 883714.5 ymax: 1980721 m_range: mmin: 0 mmax: 4.7159 Projected CRS: NAD83(2011) / Illinois East (ftUS) Reading layerxs_300_100_points' from data sourceZ:\Work\FluvialGeomorph\Projects\Illinois_SSRP_Sites_2004_2016\SSRP_Sites\Site_1\Site_1_2017.gdb' using driverOpenFileGDB' Simple feature collection with 10414 features and 11 fields Geometry type: POINT Dimension: XYM Bounding box: xmin: 879215.4 ymin: 1973915 xmax: 883786.7 ymax: 1980740 m_range: mmin: 0 mmax: 60.9593 Projected CRS: NAD83(2011) / Illinois East (ftUS) Reading layerxs_300_100_points' from data sourceZ:\Work\FluvialGeomorph\Projects\Illinois_SSRP_Sites_2004_2016\SSRP_Sites\Site_1\Site_1_2009.gdb' using driverOpenFileGDB' Simple feature collection with 10414 features and 11 fields Geometry type: POINT Dimension: XYM Bounding box: xmin: 879215.4 ymin: 1973915 xmax: 883786.7 ymax: 1980740 m_range: mmin: 0 mmax: 60.9593 Projected CRS: NAD83(2011) / Illinois East (ftUS) Reading layerflowline' from data sourceZ:\Work\FluvialGeomorph\Projects\Illinois_SSRP_Sites_2004_2016\SSRP_Sites\Site_1\Site_1_2017.gdb' using driverOpenFileGDB' Simple feature collection with 1 feature and 5 fields Geometry type: MULTILINESTRING Dimension: XY Bounding box: xmin: 879189.6 ymin: 1973962 xmax: 883726.4 ymax: 1980721 Projected CRS: NAD83(2011) / Illinois East (ftUS) Reading layerxs_300_100_dims_L1' from data sourceZ:\Work\FluvialGeomorph\Projects\Illinois_SSRP_Sites_2004_2016\SSRP_Sites\Site_1\Site_1_2017.gdb' using driverOpenFileGDB' Simple feature collection with 52 features and 47 fields Geometry type: MULTILINESTRING Dimension: XY Bounding box: xmin: 879215.4 ymin: 1973915 xmax: 883786.7 ymax: 1980740 Projected CRS: NAD83(2011) / Illinois East (ftUS) Reading layerfeatures' from data sourceZ:\Work\FluvialGeomorph\Projects\Illinois_SSRP_Sites_2004_2016\SSRP_Sites\Site_1\Site_1_2017.gdb' using driver `OpenFileGDB' Simple feature collection with 3 features and 2 fields Geometry type: POINT Dimension: XYZM Bounding box: xmin: 879189.6 ymin: 1976169 xmax: 883496.1 ymax: 1978470 z_range: zmin: 0.0001308333 zmax: 0.0001308333 m_range: mmin: 1.844674e+15 mmax: 1.844674e+15 Projected CRS: NAD83(2011) / Illinois East (ftUS) processing file: level_1_report.RmdError in .handleSimpleError : error in evaluating the argument 'x' in selecting a method for function 'extent': Unknown error (code 9) Failed to execute (LevelOneReport). Failed at Wednesday, March 22, 2023 7:45:39 AM (Elapsed Time: 6.36 seconds)
Report L1 also shows an Error at Elevation Overview:
Report - L1
Parameters
stream Site 1 42 County SWCD flowline_fc Z:\Work\FluvialGeomorph\Projects\Illinois_SSRP_Sites_2004_2016\SSRP_Sites\Site_1\Site_1_2017.gdb\FD\flowline xs_dimensions_fc Z:\Work\FluvialGeomorph\Projects\Illinois_SSRP_Sites_2004_2016\SSRP_Sites\Site_1\Site_1_2017.gdb\FD\xs_300_100_dims_L1 flowline_points_1 Z:\Work\FluvialGeomorph\Projects\Illinois_SSRP_Sites_2004_2016\SSRP_Sites\Site_1\Site_1_2017.gdb\FD\flowline_points flowline_points_2 Z:\Work\FluvialGeomorph\Projects\Illinois_SSRP_Sites_2004_2016\SSRP_Sites\Site_1\Site_1_2009.gdb\FD\flowline_points flowline_points_3
flowline_points_4
xs_points_1 Z:\Work\FluvialGeomorph\Projects\Illinois_SSRP_Sites_2004_2016\SSRP_Sites\Site_1\Site_1_2017.gdb\FD\xs_300_100_points xs_points_2 Z:\Work\FluvialGeomorph\Projects\Illinois_SSRP_Sites_2004_2016\SSRP_Sites\Site_1\Site_1_2009.gdb\FD\xs_300_100_points xs_points_3
xs_points_4
survey_name_1 2017 survey_name_2 2009 survey_name_3
survey_name_4
features_fc Z:\Work\FluvialGeomorph\Projects\Illinois_SSRP_Sites_2004_2016\SSRP_Sites\Site_1\Site_1_2017.gdb\FD\features dem Z:\Work\FluvialGeomorph\Projects\Illinois_SSRP_Sites_2004_2016\SSRP_Sites\Site_1\Site_1_2017.gdb\dem_hydro show_xs_map true profile_units feet aerial false elevation true xs_label_freq 10 exaggeration 10 extent_factor 1.2 output_dir Z:\Work\FluvialGeomorph\Projects\Illinois_SSRP_Sites_2004_2016\Reports output_format word_document
Messages
Start Time: Wednesday, March 22, 2023 7:50:52 AM Setting pandoc directory... Using pandoc: C:/Program Files/RStudio/bin/quarto Pandoc available: TRUE Compare input tool parameters [38;5;246m# A tibble: 26 x 3[39m param_name esri_type r_type[39m[23m [3m[38;5;246m[39m[23m [3m[38;5;246m[39m[23m
[3m[38;5;246m
[38;5;250m 1[39m stream character character [38;5;250m 2[39m flowline_fc character character [38;5;250m 3[39m xs_dimensions_fc character character [38;5;250m 4[39m flowline_points_1 character character [38;5;250m 5[39m flowline_points_2 character character [38;5;250m 6[39m flowline_points_3 NULL NULL
[38;5;250m 7[39m flowline_points_4 NULL NULL
[38;5;250m 8[39m xs_points_1 character character [38;5;250m 9[39m xs_points_2 character character [38;5;250m10[39m xs_points_3 NULL NULL
[38;5;250m11[39m xs_points_4 NULL NULL
[38;5;250m12[39m survey_name_1 character character [38;5;250m13[39m survey_name_2 character character [38;5;250m14[39m survey_name_3 NULL NULL
[38;5;250m15[39m survey_name_4 NULL NULL
[38;5;250m16[39m features_fc character character [38;5;250m17[39m dem character character [38;5;250m18[39m show_xs_map logical logical
[38;5;250m19[39m profile_units character character [38;5;250m20[39m aerial logical logical
[38;5;250m21[39m elevation logical logical
[38;5;250m22[39m xs_label_freq integer integer
[38;5;250m23[39m exaggeration double double
[38;5;250m24[39m extent_factor double double
[38;5;246m# i 2 more rows[39m [38;5;246m# i Use
print(n = ...)to see more rows[39m Reading layerflowline_points' from data sourceZ:\Work\FluvialGeomorph\Projects\Illinois_SSRP_Sites_2004_2016\SSRP_Sites\Site_1\Site_1_2017.gdb' using driverOpenFileGDB' Simple feature collection with 15824 features and 5 fields Geometry type: POINT Dimension: XYM Bounding box: xmin: 879189.6 ymin: 1973963 xmax: 883726.4 ymax: 1980721 m_range: mmin: 0 mmax: 4.7159 Projected CRS: NAD83(2011) / Illinois East (ftUS) Reading layerflowline_points' from data sourceZ:\Work\FluvialGeomorph\Projects\Illinois_SSRP_Sites_2004_2016\SSRP_Sites\Site_1\Site_1_2009.gdb' using driverOpenFileGDB' Simple feature collection with 21727 features and 5 fields Geometry type: POINT Dimension: XYM Bounding box: xmin: 879189.6 ymin: 1973964 xmax: 883714.5 ymax: 1980721 m_range: mmin: 0 mmax: 4.7159 Projected CRS: NAD83(2011) / Illinois East (ftUS) Reading layerxs_300_100_points' from data sourceZ:\Work\FluvialGeomorph\Projects\Illinois_SSRP_Sites_2004_2016\SSRP_Sites\Site_1\Site_1_2017.gdb' using driverOpenFileGDB' Simple feature collection with 10414 features and 11 fields Geometry type: POINT Dimension: XYM Bounding box: xmin: 879215.4 ymin: 1973915 xmax: 883786.7 ymax: 1980740 m_range: mmin: 0 mmax: 60.9593 Projected CRS: NAD83(2011) / Illinois East (ftUS) Reading layerxs_300_100_points' from data sourceZ:\Work\FluvialGeomorph\Projects\Illinois_SSRP_Sites_2004_2016\SSRP_Sites\Site_1\Site_1_2009.gdb' using driverOpenFileGDB' Simple feature collection with 10414 features and 11 fields Geometry type: POINT Dimension: XYM Bounding box: xmin: 879215.4 ymin: 1973915 xmax: 883786.7 ymax: 1980740 m_range: mmin: 0 mmax: 60.9593 Projected CRS: NAD83(2011) / Illinois East (ftUS) Reading layerflowline' from data sourceZ:\Work\FluvialGeomorph\Projects\Illinois_SSRP_Sites_2004_2016\SSRP_Sites\Site_1\Site_1_2017.gdb' using driverOpenFileGDB' Simple feature collection with 1 feature and 5 fields Geometry type: MULTILINESTRING Dimension: XY Bounding box: xmin: 879189.6 ymin: 1973962 xmax: 883726.4 ymax: 1980721 Projected CRS: NAD83(2011) / Illinois East (ftUS) Reading layerxs_300_100_dims_L1' from data sourceZ:\Work\FluvialGeomorph\Projects\Illinois_SSRP_Sites_2004_2016\SSRP_Sites\Site_1\Site_1_2017.gdb' using driverOpenFileGDB' Simple feature collection with 52 features and 47 fields Geometry type: MULTILINESTRING Dimension: XY Bounding box: xmin: 879215.4 ymin: 1973915 xmax: 883786.7 ymax: 1980740 Projected CRS: NAD83(2011) / Illinois East (ftUS) Reading layerfeatures' from data sourceZ:\Work\FluvialGeomorph\Projects\Illinois_SSRP_Sites_2004_2016\SSRP_Sites\Site_1\Site_1_2017.gdb' using driver `OpenFileGDB' Simple feature collection with 3 features and 2 fields Geometry type: POINT Dimension: XYZM Bounding box: xmin: 879189.6 ymin: 1976169 xmax: 883496.1 ymax: 1978470 z_range: zmin: 0.0001308333 zmax: 0.0001308333 m_range: mmin: 1.844674e+15 mmax: 1.844674e+15 Projected CRS: NAD83(2011) / Illinois East (ftUS) processing file: level_1_report.RmdError in .handleSimpleError : error in evaluating the argument 'x' in selecting a method for function 'extent': Unknown error (code 9) Failed to execute (LevelOneReport). Failed at Wednesday, March 22, 2023 7:50:58 AM (Elapsed Time: 5.50 seconds)