Closed lorenzoh closed 3 years ago
This use case covers this MonAI tutorial for 3D multi-class semantic segmentation.
Below is a list of references to parts that can be done and functionality that is missing to recreate the tutorial in Julia.
Available from http://medicaldecathlon.com/
ToDos:
See DataAugmentation.jl
Use DataLoaders.jl
For wrapping the whole data pipeline, consider DLPipelines.jl
see https://github.com/DhairyaLGandhi/UNet.jl, should probably work fine. Maybe add some tweaks from fastai's implementation.
Flux.ADAM
Logger
TensorBoardBackend
Checkpointer
ToDos
I am closing this after moving it to a discussion topic. The idea is to reduce the issues section to actionable items for contributors. Discussions and user stories can go in the Discussions tab.
This use case covers this MonAI tutorial for 3D multi-class semantic segmentation.
Below is a list of references to parts that can be done and functionality that is missing to recreate the tutorial in Julia.
Dataset/data container
Available from http://medicaldecathlon.com/
ToDos:
Data preprocessing/transformation/augmentation
See DataAugmentation.jl
ToDos:
Data loading/data iterator
Use DataLoaders.jl
For wrapping the whole data pipeline, consider DLPipelines.jl
Model
see https://github.com/DhairyaLGandhi/UNet.jl, should probably work fine. Maybe add some tweaks from fastai's implementation.
Training
Flux.ADAM
Logger
withTensorBoardBackend
Checkpointer
to save the modelToDos