FlyBase / GO-curation

For projects related to GO curation in FlyBase
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update pathway group cv term dependants #110

Closed hattrill closed 1 month ago

hattrill commented 3 months ago

For next Fbcv update:

Ask Harvard and IU to update: 'signaling pathway group' instead of pathway group

Impacts: web: pathway pages, search tab IU: pathway file and markdown list

hattrill commented 2 months ago

New term for FBcv:0007034 ; signaling pathway group will be in for FB2024_03 EP4

hattrill commented 2 months ago

replace: pathway group -> signaling pathway group for 72 gene groups

(note: pathway group ; FBCV:0003017)

hattrill commented 1 month ago

Hi @gantonazzo - are you still making the file for the pathway networks? If so, I have changed all pathway groups cv to: FBcv:0007034 signaling pathway group Should be 72 instances. I will add to HarvDev ticket for Chris' attention as well.

gantonazzo commented 1 month ago

Hi @gantonazzo - are you still making the file for the pathway networks? If so, I have changed all pathway groups cv to: FBcv:0007034 signaling pathway group Should be 72 instances. I will add to HarvDev ticket for Chris' attention as well.

Yes, I will still make the files for this release and, if Chris can match my output files, then he will take over from the following release. I warned him that we would have to change the CV term in these release, but I still have to tweak the scripts so he can do the same on his side.

hattrill commented 1 month ago

I am going to close this as tickets are on jira now.