FOODON web site links broken

FoodOntology / foodon

The core repository for the FOODON food ontology project. This holds the key classes of the ontology; larger files and the results of text-mining projects will be stored in other repos.

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FOODON web site links broken #290

Closed caufieldjh closed 1 year ago

caufieldjh commented 1 year ago

Apologies if there's a better place for this issue.

Some links on https://foodon.org/ currently redirect to broken or unsavory locations.

On https://foodon.org/resources/software-and-db/ for example:

https://index.globalnames.org/ is a 404
https://yourterm.org/yourterm-food/ is a redirect

On https://foodon.org/resources/food-humour/ , the link to the peanut butter sandwich video (https://www.youtube.com/watch?v=Ct-lOOUqmyY) is private.

kltm commented 1 year ago

Related, I'd also note that links in OLS often include the closing ); http://www.ebi.ac.uk/ols4/ontologies/foodon/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FFOODON_03301906 .

ddooley commented 1 year ago

Thanks for this feedback! I've updated the indicated links now!

As for the "SIREN DB annotation" references, I see Ontobee and OLS are both including tailing parentheses of a parenthasized URL in the text. I suspect this can't be solved just by adding a trailing /. I think we'll duck and solve this issue by simplifying those foodon references to basic ontology code refs [FOODON:12345678]. I'll let you know here when that is done.

ddooley commented 1 year ago

Our draft foodon-edit.owl now solves the SIREN DB link problem. We'll release a new foodon version within a few weeks.