Documentation and adjustment

[trotsiuk]

I have documented a bit more different data and functions as well as cleaned the example and vignette. Couple of things not implemented but I would like to raise:

• [ ] parameters. Currently the structure of the parameter table is very different from the original description file and the xcell version input. I wonder if we can consolidate and make it more consistent (which will require editing the fortran variable declaration) with original. Otherwise it took me a while to identify what is what. There are also variables I'm not sure what they mean, maybe you can have a look.
• [ ] thinning table have many siteID which are not in the data_site file, and the siteID from data_site are not in the data_thinning file. Shall it be corrected?
• data_climate. data_site have a climateID assigned to it, but if I understood correctly it is only the order of the dimension in the tree-dimensional array of data_climate. Shall we introduce the id (similar to siteId) that will be persistent? E.g. we can have a climate data called vallis1, kURG3

[ForModLabUHel]

@trotsiuk parameters: Do you mean that the order of the parameters should be the same of the description file? yes we can do it.

thinning: it is just a template for now. it should work but I didn't test it properly yet. We can skype, or you can change it and try.

data_climate: Yes, it make sense when you run for many many sites.

[trotsiuk]

Thank you for reply @checcomi I will think about adjusting some more things. Currently will try to run a bit more of test

[ForModLabUHel]

Good that you @trotsiuk are further testing the package. I'll pull soon a new version with all the outputs.