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ForwardSimulation / forrustts

Forward time simulation, rust, and tree sequences.
https://docs.rs/forrustts
MIT License
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Update tskit requirement from 0.11.1 to 0.12.0 #231

Closed dependabot[bot] closed 1 year ago

dependabot[bot] commented 1 year ago

Updates the requirements on tskit to permit the latest version.

Release notes

Sourced from tskit's releases.

0.12.0

[0.12.0] - 2022-12-23

Documentation

  • Book section on lending row iterators (#406)
  • Advanced metadata topics in book (#407)
  • Book chapter on edge differences (#417)

Features

  • TreeSequence::edge_differences_iter (#410)
  • Add convience functions to get usize from row ids. (#413)
  • Tree::total_branch_length now works. (#429)
  • Add getters/setters for Bookmark. (#437)

Miscellaneous Tasks

  • Update bindgen requirement from 0.61.0 to 0.63.0 (#415)

Refactor

  • [breaking] Replace Deref with delegation of TableViews API (#409)
  • [breaking] Remove TskitTypeAccess trait (#411)
  • Allow TreeSequence::edge_differences_iter to Err. (#412)
  • [breaking] Usize to SizeType conversion is now fallible. (#419)
  • Macros only use newtype public API. (#420)
  • Move newtypes into module (#421)
  • The raw_metadata fn for tables now takes Into. (#425)
  • Add low-level table wrappers to sys (#426)
  • Generalize slice building in sys (#427)
  • Remove many unsafe calls from tree_interface.rs (#428)
  • Add sys::LLTreeSeq. (#430)
  • Sys module no longer depends on TskitError (#431)
  • Move Drop details for TreeSequence to sys. (#432)
  • Add low level owning tables to sys (#433)
  • Tidy up table definitions (#434)

Styling

  • [breaking] Rename all OwnedX tables to OwningX. (#408)
  • Replace column access macro with generic fn (#422)
  • Generic fns for ragged column access (#423)
  • Use fn to get array slices from Trees. (#424)
Changelog

Sourced from tskit's changelog.

[0.12.0] - 2022-12-23

Documentation

  • Book section on lending row iterators (#406)
  • Advanced metadata topics in book (#407)
  • Book chapter on edge differences (#417)

Features

  • TreeSequence::edge_differences_iter (#410)
  • Add convience functions to get usize from row ids. (#413)
  • Tree::total_branch_length now works. (#429)
  • Add getters/setters for Bookmark. (#437)

Miscellaneous Tasks

  • Update bindgen requirement from 0.61.0 to 0.63.0 (#415)

Refactor

  • [breaking] Replace Deref with delegation of TableViews API (#409)
  • [breaking] Remove TskitTypeAccess trait (#411)
  • Allow TreeSequence::edge_differences_iter to Err. (#412)
  • [breaking] Usize to SizeType conversion is now fallible. (#419)
  • Macros only use newtype public API. (#420)
  • Move newtypes into module (#421)
  • The raw_metadata fn for tables now takes Into. (#425)
  • Add low-level table wrappers to sys (#426)
  • Generalize slice building in sys (#427)
  • Remove many unsafe calls from tree_interface.rs (#428)
  • Add sys::LLTreeSeq. (#430)
  • Sys module no longer depends on TskitError (#431)
  • Move Drop details for TreeSequence to sys. (#432)
  • Add low level owning tables to sys (#433)
  • Tidy up table definitions (#434)

Styling

  • [breaking] Rename all OwnedX tables to OwningX. (#408)
  • Replace column access macro with generic fn (#422)
  • Generic fns for ragged column access (#423)
  • Use fn to get array slices from Trees. (#424)

[0.12.0-alpha.1] - 2022-11-09

Bug Fixes

  • [breaking] MetadataError::RoundtripError now requires Send + Sync (#396)

... (truncated)

Commits


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dependabot[bot] commented 1 year ago

Superseded by #233.