ForwardSimulation / forrustts

Forward time simulation, rust, and tree sequences.
https://docs.rs/forrustts
MIT License
3 stars 0 forks source link

Update tskit requirement from 0.11.1 to 0.13.0 #233

Closed dependabot[bot] closed 1 year ago

dependabot[bot] commented 1 year ago

Updates the requirements on tskit to permit the latest version.

Release notes

Sourced from tskit's releases.

0.13.0

[0.13.0] - 2023-01-31

Documentation

  • Fix docs in tree.rs re: DerefMut vs delegating. (#452)

Features

  • Use Bookmark in haploid_wright_fisher example. (#441)
  • Impl Default for row id newtypes (#447)
  • TableViews can now lend &mut for all table types. (#455)
  • Impl Default for Bookmark (#463)
  • Implement builder API for flags types (#464)

Refactor

  • Use sys::LowLevelPointerManager to manage ownership of C API types. (#448)
  • Remove impl Deref/DerefMut for LLEdgeDifferencesIterator (#451)
  • Remove code duplication for adding rows to NodeTable. (#453)
  • Remove code duplication for adding edge table rows (#456)
  • Remove code duplication when adding population table rows. (#457)
  • Reduce code duplication adding individual table rows (#458)
Changelog

Sourced from tskit's changelog.

[0.13.0] - 2023-01-31

Documentation

  • Fix docs in tree.rs re: DerefMut vs delegating. (#452)

Features

  • Use Bookmark in haploid_wright_fisher example. (#441)
  • Impl Default for row id newtypes (#447)
  • TableViews can now lend &mut for all table types. (#455)
  • Impl Default for Bookmark (#463)
  • Implement builder API for flags types (#464)

Refactor

  • Use sys::LowLevelPointerManager to manage ownership of C API types. (#448)
  • Remove impl Deref/DerefMut for LLEdgeDifferencesIterator (#451)
  • Remove code duplication for adding rows to NodeTable. (#453)
  • Remove code duplication for adding edge table rows (#456)
  • Remove code duplication when adding population table rows. (#457)
  • Reduce code duplication adding individual table rows (#458)
  • Remove code duplication for adding mutation table rows. (#459)
  • Remove code duplication for adding site table rows (#460)
  • Remove code duplication when adding migration table rows (#461)
  • Remove code duplication for adding provenance table rows (#462)
  • [breaking] Remove generic from TableCollection::simplify (#465)

[0.12.0] - 2022-12-23

Documentation

  • Book section on lending row iterators (#406)
  • Advanced metadata topics in book (#407)
  • Book chapter on edge differences (#417)

Features

  • TreeSequence::edge_differences_iter (#410)
  • Add convience functions to get usize from row ids. (#413)
  • Tree::total_branch_length now works. (#429)
  • Add getters/setters for Bookmark. (#437)

Miscellaneous Tasks

  • Update bindgen requirement from 0.61.0 to 0.63.0 (#415)

Refactor

  • [breaking] Replace Deref with delegation of TableViews API (#409)

... (truncated)

Commits


Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.


Dependabot commands and options
You can trigger Dependabot actions by commenting on this PR: - `@dependabot rebase` will rebase this PR - `@dependabot recreate` will recreate this PR, overwriting any edits that have been made to it - `@dependabot merge` will merge this PR after your CI passes on it - `@dependabot squash and merge` will squash and merge this PR after your CI passes on it - `@dependabot cancel merge` will cancel a previously requested merge and block automerging - `@dependabot reopen` will reopen this PR if it is closed - `@dependabot close` will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually - `@dependabot ignore this major version` will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this minor version` will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself) - `@dependabot ignore this dependency` will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself)
dependabot[bot] commented 1 year ago

Superseded by #238.