Open viabard opened 2 years ago
When using methylcheck.run_qc() without running any updated methylprep functions, the manifest name is different, so there is a file not found error.
methylcheck.run_qc()
FileNotFoundError Traceback (most recent call last) <ipython-input-6-e73e0aa9d459> in <module> ----> 1 methylcheck.run_qc(initial_folder) ~/opt/anaconda3/lib/python3.8/site-packages/methylcheck/qc_plot.py in run_qc(path) 54 qc_signal_intensity(meth=meth_df, unmeth=unmeth_df, poobah=poobah) 55 plot_controls(controls, 'all') ---> 56 plot_beta_by_type(beta_df, 'all') 57 58 ~/opt/anaconda3/lib/python3.8/site-packages/methylcheck/qc_plot.py in plot_beta_by_type(beta_df, probe_type, return_fig, silent, on_lambda) 550 LOGGER.setLevel(logging.INFO) 551 else: --> 552 raise FileNotFoundError("manifest file not found.") 553 554 # merge reference col, filter probes, them remove ref col(s) FileNotFoundError: manifest file not found. ---------------------------------------------------------------------------
This was fixed by running methylprep.Manifest('epic')
methylprep.Manifest('epic')
When using
methylcheck.run_qc()
without running any updated methylprep functions, the manifest name is different, so there is a file not found error.