FoxoTech / methylprep

Python-based preprocessing software for Illumina methylation arrays
MIT License
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Feature/v1.6.1 #103

Closed marcmaxson closed 2 years ago

github-actions[bot] commented 2 years ago

File Coverage
All files 73% :white_check_mark:
methylprep/download/array_express.py 14% :x:
methylprep/download/geo.py 54% :white_check_mark:
methylprep/download/miniml.py 47% :white_check_mark:
methylprep/download/process_data.py 69% :white_check_mark:
methylprep/download/samplesheet_sync_idat.py 62% :white_check_mark:
methylprep/files/idat.py 95% :white_check_mark:
methylprep/files/manifests.py 92% :white_check_mark:
methylprep/files/sample_sheets.py 79% :white_check_mark:
methylprep/models/arrays.py 90% :white_check_mark:
methylprep/models/controls.py 87% :white_check_mark:
methylprep/models/probes.py 86% :white_check_mark:
methylprep/models/samples.py 72% :white_check_mark:
methylprep/models/sigset.py 83% :white_check_mark:
methylprep/models/sketchy_probes.py 62% :white_check_mark:
methylprep/processing/dye_bias.py 91% :white_check_mark:
methylprep/processing/multi_array_idat_batches.py 85% :white_check_mark:
methylprep/processing/p_value_probe_detection.py 88% :white_check_mark:
methylprep/processing/pipeline.py 85% :white_check_mark:
methylprep/processing/postprocess.py 91% :white_check_mark:
methylprep/processing/preprocess.py 92% :white_check_mark:
methylprep/utils/data_frames.py 40% :white_check_mark:
methylprep/utils/files.py 78% :white_check_mark:
methylprep/utils/parsing.py 86% :white_check_mark:
methylprep/utils/progress_bar.py 71% :white_check_mark:

Minimum allowed coverage is 40%

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