FoxoTech / methylprep

Python-based preprocessing software for Illumina methylation arrays
MIT License
32 stars 14 forks source link

Feature/v1.7.0 -- adds parquet support #114

Closed marcmaxson closed 2 years ago

github-actions[bot] commented 2 years ago

File Coverage
All files 74% :white_check_mark:
methylprep/download/array_express.py 14% :x:
methylprep/download/geo.py 63% :white_check_mark:
methylprep/download/miniml.py 48% :white_check_mark:
methylprep/download/process_data.py 74% :white_check_mark:
methylprep/download/samplesheet_sync_idat.py 62% :white_check_mark:
methylprep/files/idat.py 95% :white_check_mark:
methylprep/files/manifests.py 92% :white_check_mark:
methylprep/files/sample_sheets.py 78% :white_check_mark:
methylprep/models/arrays.py 90% :white_check_mark:
methylprep/models/controls.py 87% :white_check_mark:
methylprep/models/probes.py 86% :white_check_mark:
methylprep/models/samples.py 80% :white_check_mark:
methylprep/models/sigset.py 83% :white_check_mark:
methylprep/models/sketchy_probes.py 62% :white_check_mark:
methylprep/processing/dye_bias.py 91% :white_check_mark:
methylprep/processing/multi_array_idat_batches.py 85% :white_check_mark:
methylprep/processing/p_value_probe_detection.py 68% :white_check_mark:
methylprep/processing/pipeline.py 85% :white_check_mark:
methylprep/processing/postprocess.py 91% :white_check_mark:
methylprep/processing/preprocess.py 92% :white_check_mark:
methylprep/utils/data_frames.py 40% :white_check_mark:
methylprep/utils/files.py 78% :white_check_mark:
methylprep/utils/parsing.py 86% :white_check_mark:
methylprep/utils/progress_bar.py 71% :white_check_mark:

Minimum allowed coverage is 40%

Generated by :monkey: cobertura-action against ed1a21742a1dcd7c79671bdf21e6a5f397ad4a30

codecov[bot] commented 2 years ago

Codecov Report

Merging #114 (ed1a217) into master (9828e71) will decrease coverage by 0.17%. The diff coverage is 68.29%.

@@            Coverage Diff             @@
##           master     #114      +/-   ##
==========================================
- Coverage   75.12%   74.94%   -0.18%     
==========================================
  Files          33       33              
  Lines        3746     3732      -14     
==========================================
- Hits         2814     2797      -17     
- Misses        932      935       +3     
Flag Coverage Δ
unittests 74.94% <68.29%> (-0.18%) :arrow_down:

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files Coverage Δ
methylprep/download/geo.py 63.67% <26.66%> (-0.13%) :arrow_down:
methylprep/processing/pipeline.py 85.18% <72.54%> (-0.16%) :arrow_down:
methylprep/processing/postprocess.py 91.30% <92.30%> (-0.59%) :arrow_down:
methylprep/models/samples.py 80.00% <100.00%> (ø)
methylprep/version.py 100.00% <100.00%> (ø)

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