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FrancisCrickInstitute / TWOMBLI

A ImageJ Plugin implementation of TWOMBLI
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Bug report #19

Open RobertPJenkins opened 2 months ago

RobertPJenkins commented 2 months ago

During testing, was initially working but now receiving console error when running preview: org.scijava.thread.DefaultThreadService.getThreadContext(DefaultThreadService.java:155)

Seems to fail when trying to run preview for a second time on same image. Thought it might be because I had files from the folders it was trying to delete open, but it isn't.

RobertPJenkins commented 2 months ago

Further error output. Seems temperamental if runs again after initial preview.

[ERROR] Command errored: Runner
j[ERROR] Command errored: Runner
java.lang.IllegalArgumentException: "Area" column not found
    at ij.measure.ResultsTable.getColumn(ResultsTable.java:312)
    at uk.ac.franciscrickinstitute.twombli.TWOMBLIRunner.performGapAnalysis(TWOMBLIRunner.java:422)
    at uk.ac.franciscrickinstitute.twombli.TWOMBLIRunner.run(TWOMBLIRunner.java:169)
    at org.scijava.command.CommandModule.run(CommandModule.java:196)
    at org.scijava.module.ModuleRunner.run(ModuleRunner.java:165)
    at org.scijava.module.ModuleRunner.call(ModuleRunner.java:125)
    at org.scijava.module.ModuleRunner.call(ModuleRunner.java:64)
    at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:247)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
    at java.lang.Thread.run(Thread.java:750)ava.lang.IllegalArgumentException: "Area" column not found
    at ij.measure.ResultsTable.getColumn(ResultsTable.java:312)
    at uk.ac.franciscrickinstitute.twombli.TWOMBLIRunner.performGapAnalysis(TWOMBLIRunner.java:422)
    at uk.ac.franciscrickinstitute.twombli.TWOMBLIRunner.run(TWOMBLIRunner.java:169)
    at org.scijava.command.CommandModule.run(CommandModule.java:196)
    at org.scijava.module.ModuleRunner.run(ModuleRunner.java:165)
    at org.scijava.module.ModuleRunner.call(ModuleRunner.java:125)
    at org.scijava.module.ModuleRunner.call(ModuleRunner.java:64)
    at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:247)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
    at java.lang.Thread.run(Thread.java:750)