Fixes an issue where if param['use_pretrained_model'] was evaluated before the data type had been cleaned. As param['use_pretrained_model'] was a string, both 'True' and 'False' evaluated to True.
Adds an output_scores argument which allows scores to be appended to the output data files (ref #101).
This pull request:
output_scores
argument which allows scores to be appended to the output data files (ref #101).