FredHutch / Galeano-Nino-Bullman-Intratumoral-Microbiota_2022

Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022
MIT License
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detection of microbial reads on 10X Visium slides #19

Open ftencaten opened 9 months ago

ftencaten commented 9 months ago

This is more a methodological question than a technical issue, and probably a very naive one, but how are the microbial sequences detected on 10X Visium? Aren't the primers on the spots designed to capture poly-adenylated mRNA (Extended Data Fig. 1g)?