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FredHutch / SEACR

SEACR: Sparse Enrichment Analysis for CUT&RUN
GNU General Public License v2.0
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How can I get peaks with different height? #58

Open kesozm opened 3 years ago

kesozm commented 3 years ago

Hi,

I have already used SEACR to normalize the target CUT&RUN data and I've got the output bed file. When I load it in IGV, I just saw the peaks (rectangles) but not the peaks with different height. How can I get the file with peaks with different height? Screen Shot 2021-06-06 at 3 43 54 PM "rectangles"

Screen Shot 2021-06-06 at 3 46 27 PM "Peaks with different height"

Thank you.

mpmeers commented 3 years ago

Hi,

The "peaks with different height" result from loading an alignment file such as a BAM, bedgraph, or TDF--a bed file will only report region coordinates. See the IGV user guide for more info on default displays for file formats.

Mike