FredHutch / VISCtemplates

Tools for writing reproducible reports at VISC
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Nicer formatting for report .docx files #141

Closed kelliemac closed 2 months ago

kelliemac commented 6 months ago

I updated the Word document style reference file to provide better formatting for the PT report .docx files. I used this version in creating the G002 B cell PT report. Unfortunately it is difficult to track all of the changes in .docx files like this using git, but here is a summary of the differences:

kelliemac commented 6 months ago

You can see a basic example of the updated word document formatting by downloading the zip file containing PDF and docx skeleton reports (generated by GitHub actions automatically once this pull request was created) by clicking here: https://github.com/FredHutch/VISCtemplates/actions/runs/8486161235/artifacts/1370732079

kelliemac commented 6 months ago

@mayerbry this is still draft status since we need to run the word document formatting by Solmaz, but feel free to take a look at the suggested changes anytime. you can see the new CI feature in action too (check out my previous comment)!

slager commented 2 months ago

Merged develop into this branch, as mentioned in the plan for #175.

This PR is now docx changes only, and is being test-knitted by the new CI.

kelliemac commented 2 months ago

I will update this branch and PR soon. I have been testing out changes with the C101 B-cell report so I can incorporate those changes once the report is finished. Probably will get to this sometime next week.

slager commented 2 months ago

This might be a good PR in which to also tackle #174, if straightforward (?)

kelliemac commented 2 months ago

Abandoning this PR in favor of https://github.com/FredHutch/VISCtemplates/pull/183