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FredHutch / VISCtemplates

Tools for writing reproducible reports at VISC
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Update git commit hash to short hash within Software-Package-Version-Information R chunk #222

Closed brborate closed 1 week ago

brborate commented 1 month ago

Instead of

kable( my_session_info$packages_table, format = output_type, booktabs = TRUE, linesep = "", caption = "Reproducibility software package version information" ) %>% kable_styling(font_size = 10, latex_options = "hold_position")

Suggest

my_session_info$packages_table %>% separate(source, into = c("source1", "source2"), sep = "@", fill = "right") %>% mutate( source = if_else( is.na(source2), source1, paste0(source1, "@", str_sub(source2, 1, 7), ")") ) ) %>% select(-source1, -source2) %>% kable( format = output_type, booktabs = TRUE, linesep = "", caption = "Reproducibility software package version information" ) %>% kable_styling(font_size = 10, latex_options = "hold_position")

slager commented 1 month ago

This is related to #209.

slager commented 1 week ago

Fixed by https://github.com/FredHutch/VISCfunctions/pull/92. Reinstall VISCfunctions from GitHub to use the new, shorter git hashes in your reproducibility tables.