Incorporate Alicia's guidance on PT report naming into package

[monicagerber]

I’d like to propose a naming convention for PT report RMDs, which would include some basic identifying information. Here’s my proposal:
VDCPI-cvdnum_assay_PT_Report_blindingstatusifapplicable.Rmd
where assay is the subfolder name and blindingstatusifapplicable is used if there are blinded and unblinded reports generated.
For example,
Dubois846_BAMA_PT_Report.Rmd
Hassell750_NAB_PT_Report_blinded.Rmd

[kelliemac]

Guidance on whether or not to include a batch descriptor (example: "highdose") would also be helpful

[kelliemac]

@asatofh can you please review this and let us know if you are happy with the format that Monica described above, or if you would propose any changes?

[asatofh]

@asatofh can you please review this and let us know if you are happy with the format that Monica described above, or if you would propose any changes?

I forgot about this! Yes, this format makes sense and reflects what Monica and I had discussed. The only change I'd make is to use "interim" and "final" instead of "blinded" and "unblinded", since we are doing more unblinded interim PT reports, and the interim vs final seems like a more important distinction since this reflects the folder structure. We could include both, e.g., "interim_blinded" - tagging @mayerbry so he can weigh in if needed.

[mayerbry]

small suggestion: don't use PTreport (use PT-report or PTreport) as the might be useful as a parsing character into key words describing the report