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FredHutch / easybuild-life-sciences

Howto and implementation documentation
https://fredhutch.github.io/easybuild-life-sciences/
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install gensim and fix tensorflow #132

Closed dirkpetersen closed 5 years ago

dirkpetersen commented 6 years ago

Emily needs to use the cluster for some NLP stuff, she just gave me the packages she needs and gensim was not there

petersen@rhino3:~$ python Python 3.6.5 (default, May 25 2018, 14:46:40) [GCC 5.4.0] on linux Type "help", "copyright", "credits" or "license" for more information.

import sklearn import numpy import pandas import gensim Traceback (most recent call last): File "", line 1, in ModuleNotFoundError: No module named 'gensim' import tensorflow /app/easybuild/software/Python/3.6.5-foss-2016b-fh3/lib/python3.6/site-packages/h5py-2.7.1-py3.6-linux-x86_64.egg/h5py/init.py:36: FutureWarning: Conversion of the second argument of issubdtype from float to np.floating is deprecated. In future, it will be treated as np.float64 == np.dtype(float).type. from ._conv import register_converters as _register_converters

import keras Using TensorFlow backend.

fizwit commented 5 years ago

~$ python Python 3.6.7 (default, Dec 6 2018, 05:27:59) [GCC 5.4.0] on linux Type "help", "copyright", "credits" or "license" for more information.

import cwlcli import tensorflow import keras Using TensorFlow backend. import gensim import sklearn import pandas