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FredHutch / easybuild-life-sciences

Howto and implementation documentation
https://fredhutch.github.io/easybuild-life-sciences/
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: Trinity module #455

Closed happyfox-robot closed 3 years ago

happyfox-robot commented 3 years ago

I have been playing with using the Trinity module (Trinity/2.8.4-foss-2018b).

In order to get it to run on a small test dataset I had to also load a couple of other modules to get around some errors: module load Salmon/1.2.0-gompi-2019b module load Python/3.7.4-foss-2019b-fh1
I loaded the Python module because it needs numpy (perhaps also other packages, not sure). I don't think it matters which Python version I load.

Do I understand modules right, that they should be loading all the dependencies, so I shouldn't also need to load those two additional modules before running Trinity?

I also got some errors related to Salmon (even after loading those two additional modules). I am not sure, but I think that error may have been fixed in newer versions of Trinity: https://github.com/trinityrnaseq/trinityrnaseq/issues/729

Would you be able to update our installation of the Trinity module, please, and maybe if it makes sense incorporate those two dependencies when loading the module?

fizwit commented 3 years ago

new module built Trinity/2.9.1-foss-2019b-Python-3.7.4