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FredHutch / easybuild-life-sciences

Howto and implementation documentation
https://fredhutch.github.io/easybuild-life-sciences/
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IgBLAST not seeing $IGDATA to find internal_data directory #519

Closed moduff closed 2 years ago

moduff commented 2 years ago

When I attempted to run IgBLAST on rhino, I received the following error

"BLAST query/options error: Germline annotation database human/human_V could not be found in [internal_data] directory Please refer to the BLAST+ user manual."

moduff@rhino01:\~/C101/IGBLAST$ which igblastn /app/software/IgBLAST/1.15.0-x64-linux/bin/igblastn moduff@rhino01:\~/C101/IGBLAST$ echo $IGDATA /app/software/IgBLAST/1.15.0-x64-linux/internal_data

..so things appear to be as they should be.

I tried copying the internal_data directory to my working directory where I invoke igblastn, and now it runs with no error.

Why is it not seeing/using $IGDATA?

fizwit commented 2 years ago

this was caused by a storage outage.