install newer nextflow version

[SarahNadeau]

Would it be possible add a nextflow module with a version at or above 22.11.0-edge? It looks like the most current release is 23.04.0 but the most recent module available is Nextflow/22.10.6.

I ask because I'd like to run nextflow with apptainer and support for that was only added in nextflow 22.11.0-edge.

[fizwit]

Should be able to get that done on Friday On Apr 13, 2023, at 1:15 PM, Sarah Nadeau @.***> wrote: Would it be possible add a nextflow module with a version at or above 22.11.0-edge? It looks like the most current release is 23.04.0 but the most recent module available is Nextflow/22.10.6. I ask because I'd like to run nextflow with apptainer and support for that was only added in nextflow 22.11.0-edge.

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[fizwit]

module nextflow/23.04.0

[SarahNadeau]

@fizwit I'm sorry if I'm just being thick, but I can't seem to get the new module working. Here's what I tried:

snadeau@gizmoj9:~$ module list

Currently Loaded Modules:
  1) Java/11.0.2     3) ncurses/6.1-GCCcore-8.3.0
  2) GCCcore/8.3.0   4) nextflow/23.04.0

snadeau@gizmoj9:~$ nextflow --help
CAPSULE EXCEPTION: java.io.IOException: Cannot run program "$EBROOTJAVA/bin/java": error=2, No such file or directory (for stack trace, run with -Dcapsule.log=verbose)
Unable to initialize nextflow environment