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FredHutch / easybuild-life-sciences

Howto and implementation documentation
https://fredhutch.github.io/easybuild-life-sciences/
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module nextflow/23.04.0 not working #543

Closed SarahNadeau closed 1 year ago

SarahNadeau commented 1 year ago

I loaded the module using:

module --ignore-cache load "nextflow/23.04.0"

And as I wrote in my comment, it seems the installation of nextflow is somehow broken:

@fizwit I'm sorry if I'm just being thick, but I can't seem to get the new module working. Here's what I tried:

snadeau@gizmoj9:~$ module list

Currently Loaded Modules:
  1) Java/11.0.2     3) ncurses/6.1-GCCcore-8.3.0
  2) GCCcore/8.3.0   4) nextflow/23.04.0

snadeau@gizmoj9:~$ nextflow --help
CAPSULE EXCEPTION: java.io.IOException: Cannot run program "$EBROOTJAVA/bin/java": error=2, No such file or directory (for stack trace, run with -Dcapsule.log=verbose)
Unable to initialize nextflow environment

Originally posted by @SarahNadeau in https://github.com/FredHutch/easybuild-life-sciences/issues/542#issuecomment-1509113964

fizwit commented 1 year ago

sorry fixed. Please purge and reload the module.

ml nextflow $ nextflow -v nextflow version 23.04.0.5858