bmcgough
commented
7 years ago From this list, the following are installed via EB, and there are no existing but unbuilt easyconfigs on this list:
annovar bamtools beagle beast bedtools BLAST+ bowtie2 breakdancer (should be updated to newer toolchain) BWA delly freebayes GATK GMAP-GSNAP lumpy mafft meme MUSCLE newick-utils Picard R RSEM samblaster samtools SRA-Toolkit STAR svtyper tabix TopHat
these folks have a good list of tools, we can review if these are actively used at FH
http://www.vcru.wisc.edu/simonlab/bioinformatics/programs/