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FredHutch / lf-backup

lf-backup (aka large file backup) takes a list of filenames from a csv file or sql and copies the files to a swift objectstore
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pip install errors #1

Closed dirkpetersen closed 7 years ago

dirkpetersen commented 7 years ago

seems pypandoc and some wheels stuff needs to be added

Building wheels for collected packages: lf-backup, futures, PrettyTable, positional, netifaces, msgpack-python, wrapt Running setup.py bdist_wheel for lf-backup ... error Complete output from command /usr/bin/python3 -u -c "import setuptools, tokenize;file='/tmp/pip-build-dcyzjurz/lf-backup/setup.py';exec(compile(getattr(tokenize, 'open', open)(file).read().replace('\r\n', '\n'), file, 'exec'))" bdist_wheel -d /tmp/tmpu6z2eb3hpip-wheel- --python-tag cp35: warning: pypandoc module not found, could not convert Markdown to RST usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] or: -c --help [cmd1 cmd2 ...] or: -c --help-commands or: -c cmd --help

error: invalid command 'bdist_wheel'

Failed building wheel for lf-backup Running setup.py clean for lf-backup Running setup.py bdist_wheel for futures ... error Complete output from command /usr/bin/python3 -u -c "import setuptools, tokenize;file='/tmp/pip-build-dcyzjurz/futures/setup.py';exec(compile(getattr(tokenize, 'open', open)(file).read().replace('\r\n', '\n'), file, 'exec'))" bdist_wheel -d /tmp/tmprpa1wxgqpip-wheel- --python-tag cp35: /tmp/pip-build-dcyzjurz/futures/setup.py:6: UserWarning: This backport is meant only for Python 2. Python 3 users do not need it, as the concurrent.futures package is available in the standard library. warn('This backport is meant only for Python 2.\n' usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] or: -c --help [cmd1 cmd2 ...] or: -c --help-commands or: -c cmd --help

error: invalid command 'bdist_wheel'

Failed building wheel for futures Running setup.py clean for futures Running setup.py bdist_wheel for PrettyTable ... error Complete output from command /usr/bin/python3 -u -c "import setuptools, tokenize;file='/tmp/pip-build-dcyzjurz/PrettyTable/setup.py';exec(compile(getattr(tokenize, 'open', open)(file).read().replace('\r\n', '\n'), file, 'exec'))" bdist_wheel -d /tmp/tmpj5oz1hy1pip-wheel- --python-tag cp35: usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] or: -c --help [cmd1 cmd2 ...] or: -c --help-commands or: -c cmd --help

error: invalid command 'bdist_wheel'

Failed building wheel for PrettyTable Running setup.py clean for PrettyTable Running setup.py bdist_wheel for positional ... error Complete output from command /usr/bin/python3 -u -c "import setuptools, tokenize;file='/tmp/pip-build-dcyzjurz/positional/setup.py';exec(compile(getattr(tokenize, 'open', open)(file).read().replace('\r\n', '\n'), file, 'exec'))" bdist_wheel -d /tmp/tmpntb7g138pip-wheel- --python-tag cp35: usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] or: -c --help [cmd1 cmd2 ...] or: -c --help-commands or: -c cmd --help

error: invalid command 'bdist_wheel'

Failed building wheel for positional Running setup.py clean for positional Running setup.py bdist_wheel for netifaces ... error Complete output from command /usr/bin/python3 -u -c "import setuptools, tokenize;file='/tmp/pip-build-dcyzjurz/netifaces/setup.py';exec(compile(getattr(tokenize, 'open', open)(file).read().replace('\r\n', '\n'), file, 'exec'))" bdist_wheel -d /tmp/tmphwjyla89pip-wheel- --python-tag cp35: usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] or: -c --help [cmd1 cmd2 ...] or: -c --help-commands or: -c cmd --help

error: invalid command 'bdist_wheel'

Failed building wheel for netifaces Running setup.py clean for netifaces Running setup.py bdist_wheel for msgpack-python ... error Complete output from command /usr/bin/python3 -u -c "import setuptools, tokenize;file='/tmp/pip-build-dcyzjurz/msgpack-python/setup.py';exec(compile(getattr(tokenize, 'open', open)(file).read().replace('\r\n', '\n'), file, 'exec'))" bdist_wheel -d /tmp/tmp4g9342mbpip-wheel- --python-tag cp35: usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] or: -c --help [cmd1 cmd2 ...] or: -c --help-commands or: -c cmd --help

error: invalid command 'bdist_wheel'

Failed building wheel for msgpack-python Running setup.py clean for msgpack-python Running setup.py bdist_wheel for wrapt ... error Complete output from command /usr/bin/python3 -u -c "import setuptools, tokenize;file='/tmp/pip-build-dcyzjurz/wrapt/setup.py';exec(compile(getattr(tokenize, 'open', open)(file).read().replace('\r\n', '\n'), file, 'exec'))" bdist_wheel -d /tmp/tmpc3h9kv9dpip-wheel- --python-tag cp35: usage: -c [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...] or: -c --help [cmd1 cmd2 ...] or: -c --help-commands or: -c cmd --help

error: invalid command 'bdist_wheel'

Failed building wheel for wrapt Running setup.py clean for wrapt Failed to build lf-backup futures PrettyTable positional netifaces msgpack-python wrapt Installing collected packages: six, futures, requests, python-swiftclient, PrettyTable, pbr, stevedore, monotonic, netifaces, iso8601, pyparsing, pytz, wrapt, debtcollector, Babel, oslo.i18n, netaddr, oslo.utils, msgpack-python, oslo.serialization, positional, rfc3986, oslo.config, keystoneauth1, python-keystoneclient, lf-backup Running setup.py install for futures ... done Running setup.py install for PrettyTable ... done Running setup.py install for netifaces ... done Running setup.py install for wrapt ... done Running setup.py install for msgpack-python ... done Running setup.py install for positional ... done Running setup.py install for lf-backup ... done Successfully installed Babel-2.3.4 PrettyTable-0.7.2 debtcollector-1.9.0 futures-3.0.5 iso8601-0.1.11 keystoneauth1-2.14.0 lf-backup-0.0.4 monotonic-1.2 msgpack-python-0.4.8 netaddr-0.7.18 netifaces-0.10.5 oslo.config-3.18.0 oslo.i18n-3.10.0 oslo.serialization-2.14.0 oslo.utils-3.17.0 pbr-1.10.0 positional-1.1.1 pyparsing-2.1.10 python-keystoneclient-2.3.1 python-swiftclient-3.1.0 pytz-2016.7 requests-2.11.1 rfc3986-0.4.1 six-1.10.0 stevedore-1.18.0 wrapt-1.10.8 You are using pip version 8.1.1, however version 8.1.2 is available. You should consider upgrading via the 'pip install --upgrade pip' command.

dirkpetersen commented 7 years ago

added this to setuup.py:

install_requires=[ 'pip>=8.1.2', 'setuptools>=28', 'wheel', 'python-swiftclient>=3,<4', 'python-keystoneclient>=2,<3'