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FrederickHuangLin / Microbiome-Review-Code-Archive

Data, scripts, and outputs for the npj Biofilms and Microbiomes paper "Analysis of microbial compositions: A review of normalization and differential abundance analysis"
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kraken 2 report #1

Closed Roopahk90 closed 2 years ago

Roopahk90 commented 3 years ago

Is it possible to analyze the Kraken 2 report in AncomBc? to estimate Alpha and beta diversity?

FrederickHuangLin commented 3 years ago

Hi @Roopahk90,

Thanks for your query! ANCOM-BC methodology aims for differential abundance analysis and the features you mentioned are not available.

Best, Huang