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Freevini / Metagenomics_pipeline

Metagenomic analysis pipeline for the BMC Microbiology paper 2019
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mauve mapping #22

Closed Freevini closed 6 years ago

Freevini commented 6 years ago

look at intraspecific variation by mapping with mauve.

Freevini commented 6 years ago

implemented on the command line for cottens and added a renaming step for figtree