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Freevini / Metagenomics_pipeline

Metagenomic analysis pipeline for the BMC Microbiology paper 2019
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polish with freebase #29

Closed Freevini closed 6 years ago

Freevini commented 6 years ago

polish pb genome with illumina data (with freebase -p 1 (for haploidy) -minQ 0 -F 60 (min consensus)) -->bcftools consensus for consensus polishing

Freevini commented 6 years ago

added and changed workflow to incorporate