subset Lapraz reads - Githubissues

Freevini / Metagenomics_pipeline

Metagenomic analysis pipeline for the BMC Microbiology paper 2019

0 stars 0 forks source link

subset Lapraz reads #40

Open Freevini opened 6 years ago

Freevini commented 6 years ago

subset lapraz reads to around 40-50x coverage

Freevini commented 6 years ago

subset according to ~50-100x coverage of most prominent taxa (based on Metaphlan, Kaiju)...then assembly--> take unassembled reads and redo for next taxa...

Freevini commented 6 years ago

Try stepwise assembly with removeing of complete assemblies based on blobology.