Closed cassie-sims closed 1 year ago
The python run script looks for feature pickle files under $fea_dir/$monomer_name
. In run_af2comp.sh
, the default $fea_dir
is af2c_fea
. Try place your feature folders, PXYLOR1
and PXYLORCO
, under af2c_fea
as subfolders. Or change the location of $fea_dir
to point it to the correct path that has PXYLOR1
and PXYLORCO
as subfolders.
Hi! I realise it was because I specified the $fea_dir name in a way the python files in af2complex couldnt find it from their location. Fixed now. Thank you for a quick response :)
Cassie
I get this error when running the run_af2comp.sh script.
could not locate feature input file under features/
I have made a file named 'features' within which are files with the proteins names as in the .lst file, and features generated using the run_fea_gen.sh script.
My .lst file reads as follows:
Target(components) Size(AAs) Name(for output)
PXYLORCO:2/PXYLOR1:2 1790 PXLY22
There are two folders in 'features' PXYLOR1 PXYLORCO
within each file is a features.pkl and .fas file.