AlphaFold2 Complex is not using the GPU

FreshAirTonight / af2complex

Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.

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AlphaFold2 Complex is not using the GPU #4

Closed Drvanon closed 2 years ago

Drvanon commented 2 years ago

When I run this on my computer, the GPU is not used. There also seems to be no argument/option I can provide to force usage of the GPU. Right now I have a run time of ~7h, so any speed up would be very welcome.

FreshAirTonight commented 2 years ago

Please check the two closed issues that might have addressed your issue.

Drvanon commented 2 years ago

The issue was that I was running this in a docker container that did not have access to my gpus. Running docker with --gpus all did the trick.