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FreshAirTonight / af2complex

Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
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Interface clash indicator #6

Open IlyesAbdelhamid opened 2 years ago

IlyesAbdelhamid commented 2 years ago

Hello,

I would like to know where in your scripts you compute the interface clash indicator and whether your print it or not in output. Thank you in advance for your help.

Sincerely, Ilyes

FreshAirTonight commented 2 years ago

The code does not directly calculate the interface clash indicator, but you may calculate its value easily using its definition: interfacial residue number/ interficial contact number, or iCnt / iRes.

IlyesAbdelhamid commented 2 years ago

Hello,

I am sorry for the belated reply. Thank you for your help! I think in your last message you meant iRes/iCnt and not iCnt / iRes just like you wrote it. Please could you confirm?

Sincerely, Ilyes

FreshAirTonight commented 2 years ago

I think in your last message you meant iRes/iCnt and not iCnt / iRes just like you wrote it. Please could you confirm?

Yes.