Closed Lsz-20 closed 5 months ago
Newer python version require the ()
after a dictionary.keys
so you need to make these lines:
with_mesh = "face_p1" in protein_pair.keys()
preprocessed = "gen_xyz_p1" in protein_pair.keys()
And basically anywhere else there is a dictionary and dMaSIF is trying to access keys you will need to update.
Thanks for your reply, it works well now!
Hello, when I try to train the dMaSIF_search with benchmark_scripts/dMaSIF_search.sh, but it shows:
Preprocessing training dataset 0%| | 0/4615 [00:00<?, ?it/s] Traceback (most recent call last): File "main_training.py", line 55, in
train_dataset = iterate_surface_precompute(train_loader, net, args)
File "/home/zcma02/Protein_Design/dMaSIF/data_iteration.py", line 427, in iterate_surface_precompute
P1, P2 = process(args, protein_pair, net)
File "/home/zcma02/Protein_Design/dMaSIF/data_iteration.py", line 124, in process
P1 = process_single(protein_pair, chain_idx=1)
File "/home/zcma02/Protein_Design/dMaSIF/data_iteration.py", line 20, in process_single
with_mesh = "face_p1" in protein_pair.keys
TypeError: argument of type 'method' is not iterable
I checked the inputs are:train_loader, net and args,are all seems right?