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FreyrS / dMaSIF

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Availability of '{pdb_id}_meshpoints.npy' data? #9

Closed hypnopump closed 3 years ago

hypnopump commented 3 years ago

Hi there!

Cool code! I trained a model following your scripts and i wanted to benchmark its performance with the provided notebooks. However, there's some data which is not available from data_analysis/analyse_output.ipynb.

meshpoints = np.load(datafolder/(pdb_id+'_meshpoints.npy'))

How should I get the data mentioned here?

Best, Eric Alcaide

FreyrS commented 3 years ago

Hi there and thanks!

The meshpoints are the points from our previous method (https://github.com/LPDI-EPFL/masif), you can extract them from the ply files in surface_data/raw/01-benchmark_surfaces.

orange2350 commented 11 months ago

May I ask if you've solved it? By extracting using masif, does the author mean one of the files in the pre-calculated part using masif? Or is it something else? Thank you! @hypnopump